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## Check Documentation
I have checked the following places for your error:
I have checked both of these and looked through the introduction to see which steps might require the genome.
- [x] …
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Asking here as I don't know where else:
I would like to use parallel processing with the snakemake wrapper for Bismark.
From the wrapper documentation it did not become clear what I should do. I …
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These seem to be CVMFS
Identified so far
* `dm3`
* [testing history](https://usegalaxy.eu/u/jenj/h/galaxy-workflow-galaxy-hi-c-1) using the [hic workflow in this tutorial](https://training.gala…
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The hgvs library has a built in (text-based) visualization, which allows to build a view of the context of a variant with the alignment between the transcript and the reference genome. It can create r…
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Hi,
I am trying to execute Cactus on a set of custom newick+genome files (assembled similar to the example).
I am working on an HPC cluster with PBS PRO and not SLURM is there any way to execute the…
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Dear seqwish team,
I built a bacteria pangenome graph with wfmash+seqwish+bandage, which is from Chlamydia trachomatis species, about 50 genomes/strains with ANI> 99%, I have the attached graph out…
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Hi,
We have been using SyRI for two-genome comparison in multiple species pairs, and issue #48 has been helpful in fixing problems whenever "Index out of range" error shows up. The chromosomes to re…
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I am trying to run bash script on test dataset using default command provided in the manual. I am getting no output in filter_P_prediction file. File is blank.
Moreover, the script_err file displays …
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**An error occurred when using the pretable command**
**_My code:_**
parascopy pretable -f hg38.fa -o pretable.bed.gz -@ 30 --force
**_report an error：_**
0:00:00.2 Using 30 threads
0:00:00.…
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Hello,
first sample was done very well, but my second sample is stucking. My shell output is the following:
-1 SID16126_S10_L001_R1_001.fastq.gz -2 SID16126_S10_L001_R2_001.fastq.gz
[Wed 2022-0…