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Hello,
Could you please give the head of your gff file that you are using for gatc_counting.R? I am counting only half of the reads (only plus strand). Maybe my gff file is not well annotated.
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Hi, an error occured when I attempted to Scan genome-wide STR for Pacbio CCS reads.
Here is my command:
repeathmm_simg=/genetics/home/zengyiheng/project/zyh-pipeline/repeat/repeatHMM_v2.0…
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Hi I am getting the following error while running the market_basket function.
```
>>> C.TFBS_from_motifs(regions="./Peaks_hg19.bed", ````
motifs="./HOCOMOCOv11_HUMAN_motifs.txt",genome="./hg19.fa…
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Hi,
I'm running compare_genomes pipeline and am having this error:
Error in file(file, "r") : cannot open the connection
Calls: read.nexus -> scan -> file
In addition: Warning message:
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I have used RNA velocity before without any problem. However, when I tried to analyze a new set of data with the same code, I cannot get the loom file generated. There is no informative information in…
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I already mentioned this in the wiki, but I can develop a bit more here. It seems that VCF will be the format of the future for pop gen. Several packages offer support for VCF files but, IMHO, they ar…
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Hi
Thank you so much for your tutorial for making manhattan-plots using FST values.
I was able to successfully use your scripts with my "sorted_filtered_variants.vcf.gz" file, meaning that I got …
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# Some thoughts about the evaluation of the PFM submitted by applicants
- **PFM**: position frequency matrix
- **PWM**: position weight matrix
See the [benchmarking protocols](https://ibis.auto…
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lot has been changed
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Hello, @odelaneau ,
Thanks for the great work with shapeit5!!
I'm looking into implementing it in a nextflow pipeline (from modules made by @LouisLeNezet, thanks also to him!).
I have a problem…