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Implement a cronjob type job that re-calculates relationship matrices for genotypes, per protocol.
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If I'm not mistaken, the BrAPI studies can be used to represent phenotyping studies or genotyping studies (and maybe even other kinds in the future)
The problem is that for now there is no definite…
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Hi,
i have a query wrt to the tool and its utility in genotyping cancer samples ?
what model does it assume in genotyping, is it diploid model ?
Can somatic SVs for tumor samples be used to g…
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Hello,
I was wondering wether it is possible to annotate translocations with svtyper. In the header of the svtyper vcf output I see these types of SVs
##ALT=
##ALT=
##ALT=
##ALT=
##ALT=
##A…
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Hi, I'm sure I'm doing something wrong, but after a week of trial and error I still cannot find the root of the problem, so I'm asking for help here. Sorry in advance if I'm doing something stupid.
…
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Dear Torsten
I am very interested HaploBlocker tool to perform haplotype block analysis of my data. Haploview with Gabriel method gave nothing special so I thought that may your algorythm would be mo…
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Testing has shown that some samples are not assigned any genotype based on the kmer scheme file but are correctly typed using the SNP scheme. This is likely the result of a missing partial assignment …
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To fix:
1. poisson error rate uses estimates of total read count - prefer to use median depth
2. improve gt confidence
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This is needed for improving sex genotyping performance
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