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As the tree is created from a partitioned analysis of multiple genes it might be possible to find partitions that disagree with the overall tree. Such inconsistent partitions can result from horizonta…
iimog updated
3 years ago
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Dear Hyphy developers,
I am trying to learn about whether a bacterial heavy metal cycling gene has experienced different selective pressure across a heavy metal gradient. Basically, we applied sh…
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**Submitting author:** @vipinagrawal25 (Vipin Agrawal)
**Repository:** https://github.com/vipinagrawal25/MeMC
**Branch with paper.md** (empty if default branch):
**Version:** v1.1
**Editor:** @fboehm…
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So this isn't needed for protein toxins which are directly encoded, but rather for synthases that make non-protein, or partially-protein toxins that need to be built. These are obviously of relatively…
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In particular, we need pictures of the "first-generation" individuals that trip people up.
**Edit:** see below; this issue has evolved from the initial intention.
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Dear Mike,
Thank you for developing this useful tool! Could you please help me with one question about its application? The GitHub page describing Unlimited Breadsticks says “_Unlimited Breadsticks…
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I found a patent sequence (FV537213.1) in cov2.fa which is obviously non-biological (no Cs!) and causes problems for sequence search and comparison algorithms because it is low complexity. Perhaps we …
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Thank you for the nice package.
I am interested in using it for Pseudomonas and many other bacteria species if I figure out how.
I do not have custom transcript but there are databases from wher…
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Hi Qiyun,
I'm so glad to see the update of HGTector.
I have worked on this software for a couple of days and found that the TaxID of Phyllostachys (38705) was not found in taxonomy database. And…