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Hi everyone
I have been working with the National Institute for Communicable Diseases (NICD) on some of their SARS-CoV-2 sequencing. I adapted the "variation" workflow to call variants in Illumina …
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Hi,
thanks for putting together a great resource for novices to genomics data analysis!
I would suggest changing the wording in the subsection "Align reads to reference genome". Currently it rea…
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Dear bcbio developers,
For some of the species that we work on we are now starting to receive significant numbers of long read sequenced samples.
The samples are sequenced using nanopore, PacBio …
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Dear Greg - thanks for your continued work on this and for this follow up paper with updated pipeline. I'm the lead author of [Hermida et al. Nat Commun 2022](https://www.nature.com/articles/s41467-02…
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https://blog.software.illumina.com/2020/07/30/announcing-the-release-of-bcl-convert-software/
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API documentation: https://docs.ckan.org/en/latest/api/
Full package list from API: https://data.bioplatforms.com/api/3/action/package_list
Tag list: https://data.bioplatforms.com/api/3/action/tag_l…
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Hello,
trim_galore -o output --fastqc --paired $R1_file $R2_file
I have utilized trim-galore to trim illumina adapters on my PE sequencing reads.
When I tried to process the output fq files t…
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Background
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I am currently using the pre-assembly processing step of the [ATLAS pipeline](https://github.com/metagenome-atlas/atlas) to generate enhanced input sequencing reads for FGS++…
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Hi, Kai
Thank you for your tool. I am trying to apply it in my work.
I have microarray sequencing data of about 3000 individuals with ASA (**Asian** Screening Array) chips from Illumina. I …
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I am in the process of determining whether sourmash is the right tool for my metagenomic analyses. I am mostly using ONT data at the moment. Similar to previous posts (e.g. https://github.com/sourmash…