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I run megahit on a soil metagenome dataset, but only on 1 out of the 60 samples to test speed The dataset contains PE reads of each 4.7Gbp (32M reads each) and one single read file (PEs that were able…
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Hi, interested in using BinSanity, thanks for your hard work in developing/maintaining it.
I'm using Binsanity v0.4.1, installed with conda.
When running my metagenomes on cluster nodes with 400…
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I am runing Binny on 18 metagenomes with average depth 20gbps with 20 cores. This step has run 12 days and not complete yet. It also required a lot of RAM (more than 300GB)
How can I speed up this st…
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The preset meta-large uses the option `--min-count 1`, in contrast to the default `--min-count 2`:
https://github.com/voutcn/megahit/blob/36f5d4543bddc887b26e6bd42d722c9aaefac10b/src/megahit#L500
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What claims would we like to make about the Biosample metadata presented in the NMDC MongoDB compared to NCBI?
Acknowledge that our Biosample Postgres database may be lossy esp wrt non-attribute me…
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I am considering looking for overlapping genes in some viral metagenomes I obtained. I am not interested into the overlaps themselves but more into genes that I would have missed because of big overla…
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### Description of feature
I have tried to run with one sample. It seems Taxonomy classification (GTDB-Tk) didn't work. Could you please advise whether we need to download any database?
Thanks a l…
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there are reasons why this kind of thing wouldn't always work, but even that could be interesting.
we could use Luiz's MAG search (https://blog.luizirber.org/2020/07/24/mag-results/) to see if puta…
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text in the summary file states:
"custom databases without the expected columns are not supported in the summary function"
I ran:
```
nextflow run BigelowLab/gorg-classifier -profile docker --se…
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Hello,
I'm currently try to use the vitrual machine, everything is fine with the installation. I just have a problem, I try to launch the process on my metagenomes (size range between 136 159Ko and …