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Hi,
When I ran the program using Testdata, it caused an error when executing `./bin/CombinePipeline_Retrain.sh` as follows.
```
$ python scFusion.py \
-f Testdata/Testdata/ \
-o TestO…
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**Version info**
- bcbio version (`bcbio_nextgen.py --version`): 1.2.9
- OS name and version (`lsb_release -ds`): Ubuntu 18.04.6 LTS
**To Reproduce**
Exact bcbio command you have used:
```
bcb…
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We're really loving your tools and the visualizations they produce. We work in lymphoid cancers and have several driver genes that are affected by recurrent translocations that don't create fusions (e…
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Opening an issue to plan the integration.
Inviting comment from @leicray @John-F-Wagstaff @ifokkema.
Note. I will be starting this process next week (22nd/23rd March) and will use this issue to…
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Welcome to the Scout user meeting @9:00-10:30 am!
Location: On zoom: https://ki-se.zoom.us/j/61414401020?pwd=WitWeThraU16NzdXekRaRE1BWEhKUT09
Please help us fill the agenda with topics that may …
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Hello,
I have been getting a couple of warnings when I run the 'STAR in conjunction with Arriba' method. I would like to understand a bit better how much they affect the fusions output file.
Bel…
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Hi!
I am currently fiddling with LocusZoom, and I don't manage to use `zoom_region` widget. It keeps failing (see error below) and I could not find a single example using such a widget on the [exam…
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These SGD IDs aren't loading for SPAC869.07c in chromosome1.contig:
FT /controlled_curation="term=orthologous to S. cerevisiae …
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What is the process for assigning shorter names to genes?
These are very long :-)
```
Streptomyces_rishiriensis_parY_mutant_conferring_resistance_to_aminocoumarin 76
Chlamydia_trachomatis_intrin…
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Greetings,
I'm trying to install bcbio v1.2.8 on an AWS cluster, but upon running upgrade to install the aligners and genomes, I'm getting this error: 2021-10-28 00:44:02 ERROR 404: Not Found
```…