-
```
Dear Authors,
OrthAgogue is a really useful software, specially in terms of its speed for
generating orthology relationships in large datasets. My compliments! I ran
OrthAgogue on a large datas…
-
**Describe the bug**
error in `from pypath.core import network`
**To Reproduce**
Steps to reproduce the behavior:
```
>>> import pypath
>>> from pypath.core import network
Traceback (most r…
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Hi,
I followed required format to prepared my files for ete evol. See attached files. I'll report a bug when using the model b_free (the same bug is observe with the model b_neut).
Also, others …
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```
Dear Authors,
OrthAgogue is a really useful software, specially in terms of its speed for
generating orthology relationships in large datasets. My compliments! I ran
OrthAgogue on a large datas…
-
Hello!
I was wondering if there was a way to obtain the direction (log2foldchange value) of the significantly different enriched pathways that are revealed from the FMAP_pathway.pl command. Is ther…
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Currently, deepnog ships one model per eggnog level and network architecture.
If we ever decide to retrain certain models, users need to individually come up with strategies to tell models apart, or …
VarIr updated
4 years ago
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Thank you for developing this amazing tool! I am wondering if zebrafish cisTarget databases will be available in the future, like for human/mouse/drosophila?
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I would really like to have a way to explore which files (url) are actually put into dipper.
drseb updated
7 years ago
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Since this is designed for a meta-NGS data set - and Bowtie2 is not (he says so in his manual).
- BT2 is a *greedy* matcher = very low %ID matches will still be reported, it was designed for a si…
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since we're currently using the GTDB bacterial/archaeal genome database for decontamination, the automated classification approach doesn't correctly classify eukaryotes. so when cleaning eukaryotic bi…