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On the cluster enter guix environment and build pipeline
```
guix environment -l guix.scm
./bootstrap.sh ; ./configure
```
summary output
```
$ guix environment -l guix.scm
$ ./bootstrap…
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we should add a tiny bam input file and the three expected output files, so any changes can be minimally confirmed using md5 sums to show that the outputs are exactly the same.
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Hello,
Hope you are doing well. I am testing nextflow on a kubernetes cluster, and am getting errors. It seems that the test data that is bundled with the repo is not getting copied to the pod. Do yo…
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Hi @hyphaltip,
Can you point me to your favorite RNA-Seq data to run against your test species (_Coccidioides immitis_) in the pipeline?:
https://github.com/biodataprog/RNASeq_template/blob/ecabfc…
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## HTML e-mail summaries
We've recently implemented summary reports / e-mails in our pipelines (see [NGI-RNAseq](https://github.com/SciLifeLab/NGI-RNAseq)). They're basically the same as the [examp…
ewels updated
7 years ago
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Spun off from #2723
Params can currently be defined in config files (including profiles), params files, CLI options, and the pipeline code itself. This creates the potential for much confusion aro…
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### Description of feature
**Motivation**
Many projects will use a combination of `differentialabundance` and `rnasplice` analysis, using as input the processed data from `rnaseq`. Thus keeping t…
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Hello, I want to use this tool for miRNA analysis. It has been installed, but the following error was reported when running the demo data. What should I do to solve this problem?
`[2023-11-08T02:…
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Pipelines which are considered "terminal" should get their outputs organized into structs (which coupled with our scripts for pulling results, makes for neatly nested directories). Right now immuno.cw…
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#### What analysis module should be updated and why?
The following analysis modules are missing `README.md` documentation files:
+ `copy_number_consensus_call/`
+ `sex-prediction-from-RNASe…