-
We've started implementation of a Multimeasure class, which holds multiple AnnData objects (https://github.com/theislab/anndata). These AnnData objects are the primary object used by scanpy (https://g…
-
# Exploratory analysis of big biological data in R (a short course)
## Pre-learning
- Datacamp
## Classes
1. Tidy data. dplyr.
2. More tidy data. tidyr. ggplot2.
3. Genomics example…
-
I am trying to use CellTrek to map my single-cell RNA-seq data onto Visium ST coordinates. I have a dataset of 500k+ cells for my single-cell RNA-seq.
I ran the `traint` function with default argum…
-
Project Title: Ischaemic sensitivity of human tissue by single cell RNA seqProject Short Name: TissueStabilityProject UUID: c4077b3c-5c98-4d26-a614-246d12c2e5d7Wrangler/s: Mallory,Ann,Freeberg; Daniel…
-
Project Title: Single-cell RNA-seq analysis throughout a 125-day differentiation protocol that converted H1 human embryonic stem cells to a variety of ventrally-derived cell types.Project UUID: 2043c…
-
Project Title: Single-cell RNA-seq analysis throughout a 125-day differentiation protocol that converted H1 human embryonic stem cells to a variety of ventrally-derived cell types.Project UUID: 2043c…
-
Hello,
I read your R script about single cell RNA-seq analysis workflow.But I can't find the code about diffusionmap and monocle trajectory analysis.I'm interested in it.Can you share it on github?
-
I just saw this biorxiv manuscript and I was wondering if there are any ways to easily incorporate multinomial methods in scanpy
[Feature Selection and Dimension Reduction for Single Cell RNA-Seq bas…
-
[Single-cell RNA-seq denoising using a deep count autoencoder](https://www.nature.com/articles/s41467-018-07931-2#ref-CR33)
> **Denoising enables discovery of subtle cellular phenotypes**
> Aft…
-
Hello!
Alex,
Thanks for supporting STAR.
- What I want to do.
I want to map two reads to a index by running the following command
The reads I am using are not reads created by single cell RNA-s…