-
Dear msisensor team, do you have by any chance an associated paper explaining the method of your RNAseq pipeline? Many thanks
-
Hi,
I am trying to run DBG2OLC on contigs produced by 10x genomics supernova, with Nanopore reads. However, at some point, the log prints "0 reads loaded." and then the program throws a floating ex…
-
Hi Cutadapt team,
This is not a standard "issue" but an inquiry regarding sn/scATAC-seq data preprocessing (10x Genomics multiome). I'm using Cutadapt to trim snATAC-seq data reads before alignment…
-
We've recently released an open-source tool to expand the functionality of Cell Ranger to apply to other technologies. We provide a Docker container on an open-source license (see #2) which can be use…
-
Hello,
as discussed briefly with Zam, it would be pretty neat if cortex could handle two layers of colors:
- one to identify sample as already exists
- and one for 10x genomics chromium-like informati…
-
Hi,
I've been trying to use the scAlleleCount function on my scRNA-seq data processed with the 10x Genomics platform. It seems like the function is running without problems but afterwards all 3 res…
-
- download a data of choice from 10x genomics (you can browse them [here](https://support.10xgenomics.com/spatial-gene-expression/datasets))
- find a way to load them in R with this
- otherwise, d…
giovp updated
3 years ago
-
Hi HTStream-Team,
is it possible to use your toolkit in paired-end mode, but actually apply QC functions (polyATrim, QWindowTrim) only on one pair (e.g. R2)?
I'm asking because I tried cleaning p…
-
how to get the final assembly sequence? I guess we need moshmap or moshasm, could you give me an example?
Thanks.
-
Hi,
I went through the whole tutorial (https://github.com/JEFworks-Lab/STdeconvolve/blob/devel/docs/visium_10x.md) with my data. Was wondering how to add these pixel groups of certain cell types as…
532at updated
3 months ago