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Uuse DeepSig (GPL3) to predict signal peptides and cleavage sites.
- GH: https://github.com/BolognaBiocomp/deepsig
- DOI: https://doi.org/10.1093/bioinformatics/btx818
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Currently known:
CPCG0241
CPCG0262
GVFs in here: `/hot/project/algorithm/moPepGen/CPCGENE/processed/noncanonical-database/call-nonCanonicalPeptide/GRCh38-EBI-GENCODE34/input_csvs/CPCG.csv`
I…
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Thanks a lot for developing such a powerful tool.
I am a little confused when pvacseq used netchop to predict the netchop score.
for example, a fasta sequnece
$cat test.txt1
\>KAVYNFATC
…
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1. right now the pure "Noncoding" count is `0`, maybe add the option to input a noncoding.fasta just like `splitFasta`? I think it's nice to have all the numbers in the same place
2. The "impossibl…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/martinry/proteasy
Confirm the following by editin…
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Running the following command results in failure:
```
pvacseq run \
--iedb-install-directory /opt/iedb \
-t 10 \
-p test_vep_phased.vcf.gz \
-e1 8,9,10,11 \
-e2 15,16,17,1…
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First of all thank you for the development of fragpipe.
I am doing research on metaproteome and when I use metagenome as a database (4-8 million protein sequences with decoys & contaminats), fragpi…
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Dear Vadim,
I am repeatedly experiencing with multiple versions of DIA-NN in processing direct-DIA searches for both dia-PASEF and DIA from Orbitrap platforms. The search usually takes 10 to 12 day…
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### 路由地址
```routes
/acs/journal/:id
```
### 完整路由地址
```fullroutes
/acs/journal/accacs
/acs/journal/jacsat
```
### 相关文档
https://docs.rsshub.app/journal.html#american-chemistry-so…
-
this is the furthest we've gotten!!!
```
[ 2021-12-18 01:22:05 ] moPepGen callVariant started
[ 2021-12-18 01:24:55 ] Variant file /hot/users/yiyangliu/MoPepGen/Parser/Fusion/arriba-2.1.0/CPCG010…