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I'm just getting into gene editing, and I'm interested in the tools you're developing. I ran into a problem when running the' index-genome 'function.
>terminate called after throwing an instance of '…
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Hi! Following your guidance, I installed CRISPRCasFinder firstly. However, the process runs into some errors during cas genes detection after finishing CRISPR genes detection.
> Request: Single G…
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d3w@d3w:~/CRISPRCasFinder$ perl CRISPRCasFinder.pl -cf CasFinder-2.0.3 -def General -cas -i install_test/sequence.fasta -out Results_test_install -keep
Can't locate Date/Calc.pm in @INC (you may need…
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Hello,
I have downloaded CCfinder since I want to run it on hundreds of draft genomes. I am mainly interested in finding the list of spacers in each of them. After running CCfinder and seeing the r…
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**Ticket**: 227795
**Message**:
Hello,
Would it be possible to help me to install the following tool, so that I could run it from session node, etc? I've tried my hand it a bit but have run into…
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Hi,
I am using minced to look for CRISPR array in P. aeruginosa which contains frequently the I-F subtype. In this subtype, the CRISPR array at the upstream of Cas genes transcripts in the opposite d…
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Hi
I installed CRISPRCasFinder in my mac and run
perl ./../CRISPRCasFinder.pl -in ../../hybrid_assembly/assembly_fasta\&gfa/hybrid_fasta/Yol001.fasta -cas -cf CasFinder-2.0.2 -def G -keep local…
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Would be useful if one could supplement CCTyper with a HMM database, e.g. PFfam, which would then be used to annotate previously unknown genes in the vicinity of CRISPR-Cas loci
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It's definitely due to having the repeat count in its name so that matching against the literal string `CRISPR array` never succeeds.
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Hi, thank you for developing such a useful tool !
I successfully installed this software with a solid result of functional test.
But when I try to run a test for a multifasta file like this :
…