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Hello! Sorry if this is a simple question but I am new to using angsd for these purposes and I want to make sure that I am on the right track. I want to calculate observed and expected heterozygosity …
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@FlorianTrigodet and I have noticed several common issues emerging from recent Discord questions. These are not really bugs, but quirks of the anvi'o ecosystem that are not obvious to beginners. Many …
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When i use hla_scan on WGS data.sometimes i get wrong :ERROR: wrong HLA gene
i use :
hla_scan –b [Bam file] –v 38 –d dir_to_db/db –t 8
no matter i add -g or not ,it still wrong.
sometime it go …
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Hi, if I have multiple sets of transcriptome data can I input it at the same time?
for example:
./fungap.py --genome_assembly /data/zhaochi/w5.contigs.fasta --trans_read_1 /data/zhaochi/T1_1.fastq /…
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Hi,
I have been running the tool for more than 24 hours and It is still running. What can be the problem? Why does it take so long?
I am still at this stage: "Status: Phase I: Searching for tRN…
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Hi there
I'm trying to download all NCBI genomes for building the kraken database, but it seems not finding many of them (it creates a library with only 215 genomes).
This is what I'm running:
##th…
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Currently, MongoDB indexes are created using the _mongo_ client and these index files https://github.com/opencb/cellbase/tree/develop/cellbase-app/app/mongodb-scripts
This requires _mongo_ client t…
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Hello,
I've been trying to run minidot on two different sequences (ca. the same size), using minimap2 and I am getting this error. Do you have an idea what to do with this?
```
[12:05:37] /oc…
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> ... transcription factor motif analysis was carried out with the FIMO package, with a p-value threshold of 0.001. A total of 614 human transcription factor binding motifs from the HOCOMOCO database …
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## My Environment
* __ArangoDB Version__: 3.5
* __Storage Engine__: RocksDB
* __Deployment Mode__: Cluster
* __Deployment Strategy__: Manual Start in Docker
* __Configuration__: 3 coordinators…