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Hi, I am trying to generate summary statistics for a gwas output file in addition to using a merge file. My merge file is a very small subset of the GWAS file. In doing so I get the following KeyError…
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https://github.com/martinjzhang/scDRS
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## Error converting summary statistics
```
TypeError: ufunc 'chdtri' not supported for the input types, and the inputs could not be safely coerced to any supported types according to the casting rul…
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Hi,
I am not familiar with google cloud and hope to run the anlaysis locally. Is there a way for me to download the files from Google Cloud? For example, I want to get sumstats files but I don't kn…
yjqiu updated
5 years ago
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Hi,
I have git cloned the MTAG directory and created the conda environment. mtag.py works just fine but both ldsc.py and munge_sumstats.py do not work at all.
python ldsc.py -h throughs at me this …
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Hi, I'm new to population genetics and I'm currently using OTTERS for TWAS analysis and I have obtained the following result files: lassosum.txt, P0.001.txt, P0.05.txt, PRScs.txt, and SDPR.txt.
My …
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Hey,
I tried to run SBayesR today with a prepared summary statistics file and this is the error I get:
“Error: Residual variance is negative (-0.452340). This may indicate that effect sizes are …
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I want to be able to cite the GCP in a manuscript or other material and this be a unique and persistent identifier that can be used for all the provenance information and GCSTs associated with the GCP…
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An interesting error comes out. I have set mtag to use 'Z', I don't know why it still trying to look for 'P'
`mtag.py --sumstats bip.sumstats.txt,scz.sumstats.txt --snp_name SNP --z_name Z --n_nam…
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I got "After merging with reference panel LD, 0 SNPs remain." for my MTAG analysis.
I found [a previous issue](https://github.com/omeed-maghzian/mtag/issues/8) discussing similar warning.
But my …