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I ran jellyfish count on ccs reads produced from PacBio HiFi sequencing as follows:
```
jellyfish count -C -m 31 -s 1000 -t 10 -o marten.pb.jf m64047_240219_192555.ccs.fasta
```
And subsequent…
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I didn't get any results after entering the command. What could be the problem?
Could you possibly spare some time to take a look for me, please? I would greatly appreciate your help. The command I…
xubiy updated
2 weeks ago
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Hi,
Does any know where the pretrained Hifi GAN vocoder that works at 16KHz is available.
OR
Can any one have config file (hyper parameters setting at 16K Hz) that gives the best possible quality …
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Hi @chhylp123,
I have both short reads (Illumina) and long reads (Pacbio HiFi) for parents. Which data do you recommend to use for hifiasm-trio mode? or merge short reads and long reads?
For ya…
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**Describe the bug**
Boards that use gpiozero are incompatible with HiFiBerry due to a pin conflict on GPIO 24 (pin 18). gpiozero stops all sound output.
**To Reproduce**
Steps to reproduce the b…
txoof updated
6 months ago
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Hello,
I have assembled a mitogenome with mitoHiFi using a reference genome from a closely related species, starting from Hifiasm contigs, I could get the final.mitogenome.fasta , then I remapped H…
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Hi
I have a phased assembly and binned HiFi reads while binning short reads are difficult because of length. I am using binned hifi data and unbinned short reads for evaluation. How does the unbin…
LGG02 updated
4 months ago
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In the SLURM templates the otb.sh submission is conditioned on whether BUSCO will be run, but that conditional statement is opposite in the otb.template.slurm ( `if [[ -z "$BUSCO" ]]` ) and otb.lite.t…