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The observed node and edge counts in target graphs seems smaller than expected with large graphs.
This may relate to the number of node records exceeding CACHE_SIZE (set to 100,000 by default but a…
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hi all, cool to see you're building a new KG! What can I do to help make sure that the entities in your KG are referenced with standardized CURIEs?
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Would it make sense to:
- be able to convert moles of anything to just moles, as in, e.g., `molC` into `mol`? (Conversion to `mol` currently errors.)
- for `upreferred` to convert to moles of stuff,…
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We've standardized on a JSONL output format for Babel outputs (including compendia and conflation files for NodeNorm, synonym files for NameRes, and KGX and SSSOM for other outputs). We also have a pa…
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**Is your feature request related to a problem? Please describe.**
When I transform the Plant Ontology and the Plant Trait Ontology from json to tsv, everything is labeled as biolink:NamedThing.
…
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### Describe the bug
IBus module sets `GTK_IM_MODULE = "ibus"`, which causes ibus still leave committed texts on screen in certain apps like gnome-console and nautilus under gnome.
This environmen…
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This is incredibly curséd, but none of the terminals I have will start a shell under Miriway. I've tried:
* gnome-terminal
* Lomiri's terminal
* Alacritty
They all show a window, and you can *ty…
RAOF updated
6 months ago
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### Describe the bug
Some ingests like IntAct and STRING use symmetric edge labels like `interacts_with`. These should assert in both directions:
if ingest asserts:
`A interacts_with B`
it shoul…
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**Describe the bug**
Middle-clicking twice in quick succession, will paste text **3** times instead of the expected 2 times. It's on the second click that the text is pasted one time too many, result…
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We decided on the name PhenIO.owl to replace monarch.owl
I suggest create a new repo from scratch using ODK
use the following components
- mondo
- upheno
- all phenotype ontologies
- ubero…