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@FlorianTrigodet and I have noticed several common issues emerging from recent Discord questions. These are not really bugs, but quirks of the anvi'o ecosystem that are not obvious to beginners. Many …
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Just wonder if MicrobeAnnotator can be combined with results from pangenmoe pipeline?
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Hi,
I'm using cactus-minigraph following the workflows of pangenome: https://github.com/ComparativeGenomicsToolkit/cactus/blob/master/doc/pangenome.md
The single reference haplotype is about 800M…
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Hi!
I want to reconstruct a HPRC graph with HG002, and using the command `cactus-pangenome ./js-grch38 ./hprc-v1.1-mc.seqfile --outName hprc-v1.1-mc-grch38 --outDir hprc-v1.1-mc-grch38 --reference GR…
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Dear PGGB team,
I have a few questions about your great program.
Based on the program, it appears that wfmash performs all-vs-all alignment on a single node. From my trials, this is indeed the c…
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Hi
I've just ran a cactus-blast job, based on the cactus-prepare output, using the following command:
```
cactus-blast /cactus/jobStore /data/pangenome_cactus/steps-output/pangenome_guidetree.t…
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Hello, I tried using the ```PanVizGenerator()``` on the example pan genome (```Pangenome.csv```) and my own pangenome with EC & GO terms, however when I open the ```PanViz.html``` file, I can only see…
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**1. What were you trying to do?**
I am trying to generate vg node IDs using the vg id command. I am using the .vg files generated by using vg construct in this [link](https://github.com/vgteam/v…
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Hi, When I want to build a 30 species pangenome database for snp calling, I meet some errors. fna and other files were downloaded from PATRIC database. I found that some of strain's fna files failed …
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Hi
I'm getting an error with ODGI Extract.
I get the following error:
```
srun -n 1 singularity exec --bind /data/pangenome_snp_calling_latest/morex_v3_run:/data/pangenome_snp_calling_latest…