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Hi all
I am using raxml-ng that I installed via conda (RAxML-NG v. 1.0.3) on a ~250bp alignment of 3000 OTUs.
It got quite far and then I got this error when i checked on it this morning.
```…
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Hi,
I apologize if this is already explained some where and I just missed it, but **what is the best way to obtain a canonical listing of all the Pango lineages designated so far?** Is there a sing…
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**Submitting author:** @amkram (Alexander Kramer)
**Repository:** https://github.com/amkram/shusher
**Version:** v0.5.0
**Editor:** @mikldk
**Reviewer:** @kblin, @bede
**Archive:** 10.5281/zenodo.5567…
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Hi
I tried to run the pipeline, but step 2 seems to fail and I can't figure out how to solve this problem. The output files are written into the defined directory, so I think this is not the issue, …
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**Submitting author:** @amkram (Alexander Kramer)
**Repository:** https://github.com/amkram/shusher
**Version:** v0.5.0
**Editor:** @mikldk
**Reviewers:** @kblin, @bede
**Managing EiC:** Daniel S. Ka…
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Lineage renaming proposal: B.1.631 -> XB
by Ben Jackson
Description
(see also [this tweet](https://twitter.com/babarlelephant/status/1425859582958653442), brought to our attention by @thomasppe…
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Hello,
I have been trying to place them in the tree with pplacer but it fails for memory every time.
I have 512 GB of RAM on this node:
First run on 28 genomes:
slurmstepd: error: Job 9369956 …
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I get this error while I try to find optimal values for ds and bin.size.limit.
> Error in dimnames(x) > traceback()
> 2: `colnames 1: iCAMP::ps.bin(sp.bin = sp.bin, sp.ra = sp.ra, spname.use = sp…
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Hi all,
I am running as such:
phyloFlash.pl -read1 S_1.fastq.gz -read2 /S_2.fastq.gz -readlength 100 -lib S_def_6 -dbhome phyloflash/db/138.1 -taxlevel 6 -html -treemap -zip -log -poscov
I ha…
ghost updated
2 years ago
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Reported in bugs at .org
[toolshed.g2.bx.psu.edu/repos/iuc/hyphy_gard/hyphy_gard/2.5.31+galaxy1](http://toolshed.g2.bx.psu.edu/repos/iuc/hyphy_gard/hyphy_gard/2.5.31+galaxy1)