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### Installation Type
Docker
### pVACtools Version / Docker Image
Docker container, version 4.4.1
### Python Version
_No response_
### Operating System
_No response_
### Descri…
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Hello,
I would like to please ask if there is any way to modify the structure using an atom in the biotite? I know that the data of individual atoms can be accessed via indexing. For example, if I …
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Dear development team,
I've been encountering some issues while trying to replicate the Protein Docking task using your code and I'm hoping to get your assistance in resolving them.
Firstly, I'v…
cyzhh updated
1 month ago
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I have a system that is a protein with a cofactor (FAD).
I am trying to generate the topology for this system.
In particular I am trying to do this:
Importing the topology for the ligand from a gro…
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Related to #1762.
When you create the "Ensembl Transcript" and "Ensembl Peptide" sections on the protein pages of arabidopsis, fruitfly, yeast and sarscov2 e.g.
https://api.glygen.org/protein/d…
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I have come across something annoying with AMBER templates.
So if you export a PDB from Flare version 8.0.2 in 'AMBER PDB' mode it writes ACE and NME residues
with atom names consistent with th…
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Hi, foldseek team!
I found that foldseek has updated the search for multi chain proteins. Can clustering be performed on multi chain proteins now? Do you have any examples?
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When you create the `"Ensembl gene"` sections on the protein pages of arabidopsis, fruitfly, yeast and sarscov2 e.g.
https://[api.glygen.org/protein/detail/F4IHS2-1](https://api.glygen.org/protei…
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https://www.iedb.org/
* Start of B-cell integration?
* Annotate proteins with the epitope as candidates similar to motif annotation?
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1. Make sure you have Git LFS installed:
```bash
sudo apt-get install git-lfs
# Initialize Git LFS
git lfs install
2. Navigate to your `DATA_ROOT` and clone the source:
```
GIT_L…