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Hello, I'm using fast-glmm developed by you guys, it seems to be a great tool, but I'm having a bit of trouble and would like your help.
Here are my steps and log files:
Firstly the bgen format was …
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Hello
I have a new problem since moving to v1.6.
The select_snps function does not print out the *.divergent_SNPs.txt file.
The *.het file is empty.
I guess this has to do with vcftools but th…
RJDan updated
8 months ago
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* Identify and document the annotations we'll launch with for December.
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per Nicole:
'''
please help me out by following these guidelines
Use Arial font. Otherwise, you must figure out how to embed your fonts. To embed fonts, you might follow this procedure: (1) Open …
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I am using ieugwasr ld_clump local; error for only some files.
dat011
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Hi Oliver,
We encountered a new unexpected error while computing the weights for one gene. The error seems to occur during the execution of the 'DBSLMM' mode. Below is the error report and the releva…
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Hi @weizhouUMICH ,
Could you explain what --isCovariateOffset does in the new SAIGE version?
This is set to TRUE by default but I experienced cases where setting this to TRUE can lead to non-con…
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Problem reporting significant phenotypes for only males or females for some parameters:
Mettl5 https://www.mousephenotype.org/data/charts?accession=MGI:1922672&allele_accession_id=MGI:6273953&zygosit…
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The target annotation example query from the [Platform API playground](https://platform.opentargets.org/api) crashes.
I have identified the reasons (typos in the query):
Crashing query
```
…
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In #52 we added the ``sim_trait(ts, num_causal)`` function which returns a pandas data frame with num_causal rows. It seems to me that we will often want to simulate multiple traits, which perhaps we …