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Hi everyone,
I need a little help to deal with my assembly. I usually use Spades but since I found that Unicycler could improve my assembly, I always perform the two separately and Unicycler get the…
fetyj updated
6 years ago
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### Description of bug
The same FASTQ files are processed normally in a virtual Linux machine (Ubuntu 22.04.02 ARM64) on a Mac M3 Max with macOS Sonoma, but fail with a 'failed to limit memory' error…
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Dear BASALT team,
Do you have any idea how to solve the issue mentioned before - **command not found #18** (https://github.com/EMBL-PKU/BASALT/issues/18)?
**Error screenshot**
**Command lin…
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Dear Kevin,
I have run hybrid assembly with docker by following commands but it ended with an error.
Could you help me to find out is it memory error or something else.
(base) ThinkStation-P910:/…
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Hello,
I'm trying BASALT with a subset of my data. It looked to work fine until the step as follows that failed with the error in the title.
```
===== Mismatch correction scaffolds finished.
…
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There seem to be some issues in the way you use spades (3.11.0) with relative paths:
running this:
`assemble_spades.pl -1 kfr2_1.fq -2 kfr2_2.fq -o ass --threads 2`
results in this:
` /usr/loc…
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Hi and thanks in advance for your help!
While running MetaSV, it got stuck while running spades. There are a few 'OSError: [Errno 13] Permission denied' errors during the run_spades_single process, a…
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### Description of bug
(bio) zhisong@zhisongs-MacBook-Air spades % bin/spades.py -s ../accuvirnew/bad_nano/hiv_50_2k.fastq -o testfasta --isolate
== Error == /Users/zhisong/Desktop/accuvirnew/b…
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Hello,
I am using phyluce to analyze UCE data and some of my assemblies using spades are taking quite long and are being stopped on the cluster I use because of a time limit.
I saw that for spad…