-
According to recent emails with the MIDORI developers, it seems wise to update PEMA to where the midori db is now published. Hopefully this will solve a couple of issues that we have had (1) the gap…
-
AFAIK the dwc archives of Plazi make use of Catalogue of Life and GBIF to provide a standard classification for the species in a treatment. As this data is used to build the former, we end up with a s…
-
Why not allow gapped k-mers exists to search the best LCA?
-
Ideally, a WoRMS id code could automatically be associated with silhouette descriptions. Many available here:
* [PhyloPic — Free Silhouette Images of Life Forms](http://phylopic.org/)
* [IAN Symbo…
bbest updated
6 years ago
-
https://www.gbif.org/species/4407017
-
Hi!
In short: I have 26 paired-end metagenomic samples, with varying read counts between 500000 and 2000000 and I would like to classify them with DIAMOND. If I merge these queries to optimize the ru…
-
Hello,
I am trying to build standard kraken2 database. I have used the default command:
`kraken2-build --standard --threads 8 --db kraken_standard`
The database is created without any errors but …
-
Hi and hope all is well!
I wanted to inquire about the conda installation timeline. I know that PPR-Meta is not conda-installable which is why you need to withhold the conda implementation. I want…
-
Hi, I am trying to build my own Sourmash LCA database based on NCBI, SILVA, or Greengenes databases for taxonomic classification for my k-mer hash dataset (e.g. 7-mer) computed from 16S rRNA gene sequ…
-
@gdower
The classification of Arachnida in DwC Sep-1 edition is a mess clearly seen in the legacy UI's taxonomic tree:
- Phylum Arthropoda does not show class Arachnida as its child. Instead, the…
aoern updated
3 years ago