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Hello,
I have generated a count matrix that currently only includes transposable elements (TEs). However, I would like to expand this matrix to also include gene expression counts. In the related pap…
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I get an error running call_genotype when the script finds reshaped_repbase.fa empty. I am running it with empty files for -repremove and -pA_ME.
Could that be the issue?
2022-04-27 13:25:29,259…
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I realized we have a backlog of analysis pages that still point to a tripal page as the source instead of the appropriate data downloads page. @amcooksey sorry, this is a bit of a tedious task - could…
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Hi,
Thanks to the author for developing such a great tool. I want to analyze transposons in single-cell transcriptome data. Is this tool suitable for single-cell transcriptome data?
Thank you!
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Dear Immortal2333,
I am using your method to identify centromeres.I find that there is a aligned area where Copia ,Gypsy ,Helitron are blank in each chromosome in your plot,which is the centromere ar…
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according to @myrmoteras, a previous attempt to upload taxodros records was done in 2017.
Suggest to make a list of all pubs related to this attempt.
https://zenodo.org/communities/biosyslit?q=%…
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Hello, thank you very much for your software, the disease I study is a genetic disease, I want to find the Alu element in the SMN region, the SMN gene region is rich in Alu transposable elements, but …
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Hi there,
I am trying to use a custom list of transposable elements that can be found here: https://github.com/bergmanlab/drosophila-transposons/tree/master/current. I used the [makeTEgtf](http://l…
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Dear Daniel,
Congrat for you nice work!
I am interested to use the mode_2 of ChimeraTE,
but the script unfortunatly get trouble at the assembly step.
Do you have an idea of the problem?
I fo…