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Hi Kamil,
I'm using smudgeplot and genomescope2 to understand my data. I have paired reads from 10X genomics and I have used following command.
kmc -k21 -t16 -m64 -ci1 -cs10000 @FILES kmcdb tmp
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While working on an AIRR exporter for single cell, a few points have come up in between on how to represent some of the cell properties, I was hoping we can get some feedback on how to address these i…
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We can use CRAN (current one) but there may be several other options:
- direct installation from github
- other repos: bioconductor, r-forge etc
Write down in this issues pros and cons for eac…
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We're wondering how hard it would be to generate some mock data for patients that may have COVID-19. As I understand it, this would require a new module to be created using the Module Builder tool. …
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Hi!
first of all I want to thank you for this great package!
**Describe the bug**
I am working on a student's flow cytometry fcs files, where the order of the parameters is not the same in all t…
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Hi,
This isn't an issue per se, but more of a question of the data that can be used as input.
I have two cytometry panels with directly seven overlapping parameters (e.g CD4 BB790 on both pane…
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In reading [Section 6.1.2 Taxon Names and Identifiers](http://cfconventions.org/Data/cf-conventions/cf-conventions-1.8/cf-conventions.html#taxon-names-and-identifiers), the second paragraph (and skele…
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Hi, apologies if this is the wrong place for this kind of query. I am very new to flow cytometry analysis. I am trying to import my own data into a flowSet object downstream from constructing an sce f…
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Hello Dillon,
I've noticed a problem of resolution that is happening quite usually : I get big "pixels" where the density is important.
Usually I restart my R session and R studio and this does th…
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Hi!
I am working with some flow cytometry data. We initially employed a cleaning strategy in Flow Jo by using FlowAI. We exported the good events into new FCS files, made the gating strategy in a Flo…