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### Description of the bug
nf-core/scrnaseq test using conda fails with the following error message. Fetched from '.nextflow.log'. Thanks!
Caused by:
Process `NFCORE_SCRNASEQ:SCRNASEQ:MTX_CONV…
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I'm creating dynamic publishDir paths (e.g., `publishDir { file(params.output_dir) / "QC/${step}/multiqc/" }`), which breaks the syntax coloring (see attached).
![Screenshot 2024-03-14 at 6 04 41 …
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Hi there! I'm using nf-core/hic through a docker profile and need to edit the nextflow.config file to change the max resources my computer has available. Any advice on how to do so? I've tried creatin…
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## Feature Request
When you click on the files tab of a Nextflow workflow, the file shown is the file that is alphabetically first. It would be nice if instead it showed the main Nextflow descriptor…
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## Bug report
### Expected behavior and actual behavior
**Situation:**
When SLURM jobs are submitted by Nextflow to a SLURM node, sometimes the SLURM node fail to startup. This causes the SLU…
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### Description of the bug
sample.csv:
```
sample,fastq_1,fastq_2,feature_type
NPC_Astro_Diff_aBeta,NovaSeqX_20240927_LH00181_0041_B22TF5VLT3_bcl-convert_KL_NPC_Astro_Diff_20240916_scRNA_10X_Flex_NP…
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# hello-channels
An additional module that would fit between hello-gatk and hello-modules.
## Aims:
- Teach users about the concepts of channels and functional programming with Nextflow
- Tea…
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I am running nextNEOpi on wgs data and I am running into an issue with NEOFuse, specifically with MHCFlurry. The sample229_dwn_MHCI_final.log gives me this:
Traceback (most recent call last):
Fi…
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### Description of the bug
Dear @FriederikeHanssen,
I am experiencing problems running Control-FREEC on my WXS data from matched normal/tumor samples.
I have used sarek on the same samples to perfor…
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