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BRASS (Sanger pipeline): https://dockstore.org/containers/registry.hub.docker.com/sevenbridges/pcawg_sanger_sbg_modified/pcawg_sanger_vc_sbg_modified
- [x] Validate the usability, editability and r…
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## Bug report
Hello guys. I was trying to run nextflow with Kubernetes and have encountered some sort of permission problem with non-root user. Nextflow was trying to initialise the Pod but got an…
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Hi, @tleonardi and @lmulroney!
Thank you for providing a great tool!
It is my first time using nanocompore. I got several questions after running nanocompore. I would really appreciate it if you …
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PCAWG workflow to merge SVs from Sanger (BRASS), Broad Inst (DRanger & SnowMan) and EMBL/DKFZ (DELLY):
https://hub.docker.com/r/weischenfeldt/pcawg_sv_merge
- [x] Validate the usability, editabil…
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Delly Workflow (Updated): https://dockstore.org/containers/registry.hub.docker.com/weischenfeldt/bric-embl_delly_workflow
DKFZ: https://dockstore.org/containers/quay.io/pancancer/pcawg-dkfz-workflo…
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## Describe the issue
When running VEP Docker releases v109.2 or v109.3 the working directory seems to be empty, whereas in previous Docker releases v105.0 and v108.2 the working directory was a fold…
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---
Thank you for establishing your technology, universc.
Please help me.
I use Mac OS and try to use universc with docker image in Singularity, but the following error is occurred.
```
Singul…
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I am not able to get past this error, occurs almost immediately when running the test:
`nextflow run hoelzer-lab/rnaflow -profile test,conda,local`
```
Error executing process > 'preprocess_ill…
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Hello,
I installed Circuitseq following your indications and can't make it run even on your example data.
It raises a java error apparently `"No signature of method: java.lang.Boolean.getFileSyst…
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### Description of the bug
when running the nf-core/scrnaseq full test on a Nextflow Tower Forge deployment with Wave containers, I get the following error:
```
Error executing process > 'NFCORE_SC…