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At least in `generate` for the atlas projection, everything below the 7th level of the atlas is grouped. That means thalamic nuclei get pooled together. Should be easy to fix (see `cutAtlas` for insta…
ablot updated
4 years ago
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Nuclei RISC-V CPU IP user **should following this guidance to port your SoC** to enable quickly linux bringup and then you can port linux to your own linux sdk platform.
> **Nuclei Linux SDK is a r…
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Hi
That's a great method! I'm wondering if, without the reference data and positive/negative markers (I only have the DAPI image and transcripts.csv), this method is still viable for cell segmentati…
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### Describe the Bug
I try to use bioio to read image data in a parallelized loop. It works if the file is on a local network but fails (just hangs and stops without throwing an error) if the f…
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Using the current implementation of separate clumps (version 0.1.1), a sizeable number of nuclei are lost. These nuclei then typically are within the cytoplasm of other cells.
The way this seems to…
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https://github.com/xm1k3/cent
this tool is awesome for collecting nuclei templates.
after collecting all templates its good to run nuclei validate for removeing bad templates.
i saw rengine got…
d4op updated
9 months ago
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File "/usr/local/bin/lolcat", line 242, in
sys.exit(run()) …
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Mask-RCNN is ofen used in detection and segmentation,but it is rarely used for classification.please tell me how to modify the model so that Mask-RCNN can be used for classification tasks?Thanks
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There's org.junit.rules.ExternalResource for the Nucleus, and TemporaryFolder for storing configs.
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**Describe the bug**
```python
model = models.Cellpose(gpu=False, model_type="nuclei")
masks, _, _, _ = model.eval(image, diameter=diameter)
```
If < ~80 Gb of memory provided for the job, th…