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VCML format option export has been disabled as it was incomplete/not correct/not tested. It is needed for both CLI execution of models/simulations incompatible with SBML export and for deploying the …
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we point all model references to the single instance of a vcml-encoded biomodel
this is semantically incorrect
while on an unmodified just-exported archive it is practically resulting in correct res…
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The attached OMEX files all produce different results on copasi-on-biosimulations than they do for copasi-on-my-desktop (or, for that matter, from tellurium-on-biosimulations).
[BIOMD0000000005.o…
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The omex files in the attached zip raise errors in the Biosimulators Teste Suite, and after inspecting a few of them, the output does not match the expected ouput, as reflected in the HDF5 file (which…
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The output is placed in the parent folder, not in the requested folder.
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A series of runtime errors occur when attempting to run the attached omex file (renamed to zip for GitHub reasons):
[Elowitz-Nature-2000-Repressilator.zip](https://github.com/virtualcell/vcell/files…
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For example, the OMEX contents for BIOMD0000001072 are:
```
location format master
-- ---------…
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### Steps to reproduce
See original discussion on https://github.com/dotnet/cli/issues/10452.
Using a preview 1 .NET Core SDK (3.0.100-preview-009812) with MSBuild version 16.0.225.48734 on macO…
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### Background
- In order to get a clear understanding of exactly what has gone wrong in the process of running omex/vcml, special logs are made. These logs are critical for finding bugs and fixing m…