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A user should be able to convert a search for genes into a search for orthologs of a result set. This can be done by faceting on the epl_gene_tree field and then rewriting the query as a disjunction o…
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I run The R CMD check and I got the following results that you might want to address:
```
── R CMD check results ────────── MetENP 0.0.0.9000 ────
Duration: 2m 12s
❯ checking examples ... ERRO…
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## Short description of the problem
KeyError: 'reaction_network_ko_annotations_hash' when running `anvi-reaction-network`
## anvi'o version
```
Anvi'o .......................................: …
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Hi, I am running the Scenic+plus pipeline with Zebra fish and I am getting `Unable to load annotation for custom` warnings when I run `run_pycistarget`
All databases created specifically for Zebra …
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Hey, sorry for bothering you with more issues.
I have an error with the pathway analysis could you please help me.
I am running seaborn 0.11.2 on Python 3.10.11
![Unbenann2t](https://github.com/sae…
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Hi, I'm looking to predict genes for my insect genome. For most genes the prediction is working out good, but egapx is missing predictions for some species specific, single exon genes (experiementally…
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collect summary statistics from dataset.
Can be done easily with django methods
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Hello,
I am running into issues when using the FMAP_plot.pl script.
When I run: perl /usr/local/FMAP/FMAP_plot.pl FMAP_bulksw.vs.ecosphere/bulk_vs_coralcubaonly.comparison.pathways.txt > bulk_vs…
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One issue that we see in GCID and will be an emerging issue in projectR is the ability to search for a gene by several alias names. Currently genes are linked to a single Ensembl ID (or other IDs if …
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Genes have symbols, full names and descriptions. In some species a 'systematic synonym' is used (e.g. yeast).
Currently only synonym is shown on the app. This is in part due to everything being force…