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Can I run alphafold2 without any structure template information? when I download the pdb_mmcif dataset, it is too slow, so I want to test af2 without any structure template in my local machine. How to…
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I am trying to use a self trained resnet101 in faster rcnn. I think that i can get more accurate inferences and results by using one. The issue that I have is when training starts, it throws a Pdb err…
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File "/home/***/ProteinInvBench/opencpd/utils/main_utils.py", line 47, in get_dataset
return load_data(**config)
^^^^^^^^^^^^^^^^^^^
TypeError: load_data() missing 2 required posit…
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Great Work! It seems that ModelAngelo organizes a training set with good quality. Do you have plans to release them? I think it's a great resources for the computational CryoEM community.
Qmi3 updated
3 months ago
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Hey guys,
I get this when i run alphafold
```
python3 docker/run_docker.py --fasta_paths=/home/ahmedhas/Desktop/test.fasta --max_template_date=2021-11-01 --model_preset=multimer --data_d…
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Hello I run the firststage command. But I got an error:
`FileNotFoundError:[Error 2] No such file or directory"/pycontrast/data/NTURGBD/NTURGBD/nturgb+d_rgb_warped_correction/S013C003P037R001A049/WRG…
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This task has two steps:
- [x] Complete and merge initial notebook, started in the PR #57 by [luis-sribeiro](https://github.com/luis-sribeiro).
- [ ] Adapt this notebook to showcase how to simulate …
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Some of the entities in KB have non-derivable short_forms, that is: KB uses a short_form that cannot be derived again by pdb. Now this may or may not be a problem, but at least I wanted to point it ou…
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I get this error when trying to run prank rescore: "Dataset must contain 'protein' and 'prediction' columns!"
What is the format that the input needs to have?
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How to run the provided Inference code with custom set of Antibody and Antigen PDBs?
Should it be preprocessed to be in DB5 format? How to do that?