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I want to only use the genetic distance from inputted sequence alignments to get the cut-off values, is that possible?
BTW, if construct trees, can I use other softwares, like fasttree, phyml, raxml?
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Hi, thanks for this tool ;) A quick Q. I already ran InferCNV, HMM = T, on current "best", which is Leiden.
```
io2 = infercnv::run(io1,
cutoff=0.1,
out…
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```
Original Issue reported by Project Member Reported by leebel...@gmail.com, Apr
27, 2012 - https://code.google.com/p/alageospatialportal/issues/detail?id=952
Project Member Reported by leebel...…
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There are tress (for example [TB2_Tr1022](http://phylofile.nescent.org/trees/TB2_Tr1022/)) that are rdf:type [cdao:unrooted tree](http://purl.obolibrary.org/obo/CDAO_0000088), but then there is a [roo…
hlapp updated
11 years ago
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When calculating the RF distance between several trees, how are the values "found branches", "missed branches", and "not found branches" calculated?
If "found branches" is the number of identical br…
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Danainae basal in Nymphalidae, followed by Satyrinae, and Heliconiinae+Nymphalinae is monophylletic (see Wahlberg et al. 2009)
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Metadata | Do not e…
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For RWTY2
AKA Gelman and Rubin statistic from:
Gelman, A., & Rubin, D. B. (1992). Inference from iterative simulation using multiple sequences. Statistical science, 7(4), 457-472.
Compares va…
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#### what is multiPhATE
[multiPhate](https://github.com/carolzhou/multiPhATE)
* fully automated computational pipeline for identifying and annotating phage genes in genome sequence
* controled by a…
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Hi
When curating a study and trying to address the issues that pop-up in red such as:
Review all conflicting instances of a mapped taxon and choose an exemplar.
If the terminal/label causing the iss…
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I'm the creator of nxviz, and would love to see some of your code in our codebase! In particular, I'm looking for declarative ways of making CircosPlots, ArcPlots and others. Would you be open to work…