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Hi,
Could you tell me how to get package named "sir" in some notebooks of scRNA-Seq-invivo/analysis_pipeline directory.
I guess that the sir package means sir directory in the scRNA-Seq-invivo/analy…
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Hi everyone,
I am analyzing my scRNA-seq data and I have 12 samples. I have run inferCNV on each one of my samples and have all the results.
Now I want to combine all the results and draw a heatma…
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Dear @czarnewski
Thanks for your beautiful paper and code!
I want to use scRNA-seq data with cell type annotation to deconvolution my bulk RNA-seq.
But I only find scRNA-seq raw data and cod…
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**Project:**
Characterizing the transcriptome of individual cells is fundamental to understanding complex biological systems. Recent developments in single cell RNA sequencing (scRNA-seq) technologies…
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Hi @hxj5 , I have a question regarding 10X 5' scRNA-seq data.
For 5' sequencing, the read containing cell barcode and UMI contains part of the transcript https://kb.10xgenomics.com/hc/en-us/article…
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This package is useful in classifying the genesets signature score in scRNA-seq data, but I meet the problem to use this. What's the flow to deal with a scRNA-seq matirx data? I can't find a vignettes…
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Hi Dr. Zhang,
I read your Polarbear paper and planned to run the model on some multiomics data for the Human Brain to see how well your model performs on human brain tissue. Do you have a pretraine…
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Thank you for developing such a helpful tool. I would like to try to detect fusion genes using STAR-Fusion on 10X single-cell transcriptome data. The single-cell sample was a bone marrow sample from a…
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Hello. Not really an issue but I'd like to reach out with a question as single-cell meta-analysis term is kind of new. I'm curious about what's the difference between the usual Single-cell integrated…
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@aqzas @Huffyphenix ,
I am using CATT to extract TCR/BCR information from data from scRNA-seq of immune cells, involving more than 100 datasets. Your article gives a performance comparison of each to…