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This issue is to explore the overview of Bioinformatics
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Credits to Katie Hoadley, who would be interested in using this on a dataset of hers
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Current list:
```
Traceback (most recent call last):
File "/home/zeth/PycharmProjects/sfaira/scripts/check_urls.py", line 29, in
raise AssertionError(f"{len(failed_urls)} URLs failed.")
As…
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Hi! Where can I download the .h5, .gtf, and .csv files containing the data that are used in the script? :)
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Hi !
I used Cell Ranger pipeline v 4.0.0 for my clustering analysis, and no weight columns were generated in the Cell Ranger file.
Although it says it's backward compatible, I cannot seem to be a…
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Thank you for creating such a wonderful package. I am finding it very useful. But I have a question.
When setting scale factors to create a CellChat object, what would be a good way to input metric…
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Hi all,
I am trying to follow the 10X Visium tutorial, and when I load the data from SeuratData, the `brain
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Hello,
I'd like to request a new release because v1.4.1 cannot be built on `aarch64` architecture due to:
```
11:24:43 BIOCONDA INFO (OUT) error[E0308]: mismatched types
11:24:43 BIOCONDA INFO (…
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I noticed that this works:
```rust
fn check_int_slices(v: HashSet, lens: Vec) -> bool {
let mut lens = lens;
...
}
```
but this doesn't:
```rust
fn check_int_slices(v: HashSet, …
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Hello, Thank you for the great pipeline!
Now, I try to run the pipeline to call SV. I get an error when trying to run sv_pipeline.cwl, the error as below:
```Shell
cwltool /home/liuhui/ctDNA-pipeli…