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@joshmoore @will-moore
```
OMEZarrS3Reader reader = new OMEZarrS3Reader( "https://s3.embl.de", "us-west-2", "i2k-2020" );
SpimData em = reader.read( "em-raw.ome.zarr" );
SpimData myosin = …
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Hi Sébastien,
I am not getting any results for -gene-ontology and I have followed the instructions from your 2012 paper git repo. It seems that the cds sequence part of the script was not working due…
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Dear BASALT team,
Do you have any idea how to solve the issue mentioned before - **command not found #18** (https://github.com/EMBL-PKU/BASALT/issues/18)?
**Error screenshot**
**Command lin…
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Hi,
My issue is similar to https://github.com/sanger-pathogens/snp-sites/issues/96 only that when I manually look at the alignment file, I can find many mutations. The attached file is one such examp…
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Right now, there is support for local .zarr stores and remote stores publically accessible via HTTP or S3.
Private remote stores are more difficult, as they need certain options or credentials that a…
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We currently only look for `.emblem`, but `.embl` and `.em` also seem to be used in some projects.
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We recently accessed several of the pcawg variant calls and realized that based on the name of the files, it was likely that the `delly filter` step was being omitted, since the naming pattern was `.e…
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Hi!
I'm using the online eggnog to annotate my protein sequences. I updated my sequence and click the start button, I saw my job was running in the "Server Status" in "http://eggnog-mapper.embl.de/…
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Greetings @tischi,
since recently I get an exception when I try loading .mhd files as moving or fixed image (I tried it with .tif stacks and it worked). The image opens but afterwards I get the follo…