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Hi !
Do you think there is a possiblity to choose the order in which the genomic regions are plotted ? Like for example in the order in which they are selected ?
In the screenshot below, you c…
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Thank you very much for making this software. I have a question: When I assembled the plant mitochondrial genome, I got a file named embplant_mt.K105.scaffolds.graph1.1.path_sequence.fasta. Can I use …
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[Would the Bifrost (I believe it is actually pronounced very similarly to beef roast) colored deBruijn graph structure](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02135-8) pro…
nmb85 updated
3 years ago
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I'd like to use vgraph to compare different "variation" graphs, in the [vg](https://github.com/vgteam/vg) sense.
Could vgraph or its algorithms be applied to the DAG-like parts of generic genome gr…
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We used MASURCA 3.2.6 for genome assembly but found no fasta file for contig sequences at the end. Only final.genome.scf.fasta appeared in the CA folder. Is this normal? Below is the content from the …
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Hi I am using purge dups on a scaffolded genome as we realized the genome had many duplications after scaffolding was done.. First is this a huge issue and should the assembly be purged before scaffol…
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Hi, When I prepare to `align my short reads` to the `human pan-genome` graph genome, the result is only a path, 1. what I want is to provide me `all the sequences` that have a mismatch and full align…
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Hi @Kinggerm, I am trying to assemble the mitochondrial genome using get organelle tool but I am keep getting this error of No valid assembly graph found. I looked in the issues section and implemente…
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EVALUATE THE OBJECTIVE OF USING GET_HOMOLOGUES (Does it do the same as Roary? Ot gould be easier to use Roary)
1) The questions should be something that the student could be asking, and the tool th…
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오늘 언급된 내용 중에 HISAT2 의 Exome version 포팅 이슈가 있었습니다.
Whole genome reference graph 에 read mapping 을 하는 것인데,
exome specific 버전이 필요한 이유가 궁금해 질문 드립니다.