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### Description of the bug
As seen in the attached log file, the pipeline stops working and cycles in error with amazonaws. I am new to nf-core so I am unfamiliar with how all the parts of the pipeli…
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Hi,
I am trying to run velocyto using both run and run10x command. I get the same error in each case. It looks like an issue with samtools
I am running it on cluster using 1 node and 12ppn. I a…
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* Full error below. Low coverage error may relate to sample being WXS i.e. genomics windows with low/no coverage.
* Initially running as part of metapipeline-DNA, but also re-run with 1) call-gSNP ->…
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From the Handbook:
https://www.ncbi.nlm.nih.gov/books/NBK53714/#gbankquickstart.i_have_viral_sequence_da
- [ ] CDS feature(s) with product name(s), nucleotide locations, and amino acid translation…
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I wanted to bring this issue to your attention
I use `pfam_scan.pl ` (conda) on the command line and input the results with `analyzePFAM()`. I am using IsoQuant data.
I get this error:
```
Error i…
rsalz updated
3 months ago
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Implement like https://github.com/galaxy-genome-annotation/python-apollo/pull/25
- [ ] propagate test_suite so that all methods in load_gff3 have use test flag:
- [ ] add_attribute
- [ ] se…
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Hi,
I have an issue to run your pipeline. I tried HmmGen and TermGen and got very similar errors ?
Running the HmmGen script...
HmmGen error code: 1
HmmGen 2.25 (September 27, 2021)
====…
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Dear @pkalbers,
Can you please advice on the structure of the input data?
Lets say I am interested in the age distribution of haplotypes in divergent loci observed across the genome, for examp…
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* In Genome Browser: Track Search, one can find tracks by name using advanced search but not regular
* Elements from the Assemblies track do not show in the main search box
https://genome.ucsc.edu…
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Our cluster moved from an LSF to a SLURM workload manager this year. I really enjoy using EDTA for our genome projects and ran it on a couple of assemblies while still working under LSF. Our total rep…