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uclahs-cds
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pipeline-call-gSV
Nextflow pipeline to call germline structural variants and copy number variants using DELLY and Manta
https://uclahs-cds.github.io/pipeline-call-gSV/
GNU General Public License v2.0
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output FILTER==PASS variants from Manta and Delly output
#176
tyamaguchi-ucla
opened
3 weeks ago
0
Bump the pipeline-submodules group across 1 directory with 2 updates
#175
dependabot[bot]
opened
1 month ago
0
Add nextflow.config to release management process
#174
nwiltsie
closed
1 month ago
0
Update cluster reference paths
#173
nwiltsie
closed
1 month ago
1
Bump uclahs-cds/tool-PlantUML-action from 1.0.1 to 1 (alias)
#172
dependabot[bot]
closed
1 month ago
0
Add release management workflows
#171
nwiltsie
closed
1 month ago
0
Bump external/pipeline-Nextflow-config from `a4e99e0` to `23b7b4e` in the pipeline-submodules group
#170
dependabot[bot]
closed
1 month ago
1
Use `store_object_as_json` to store parameters
#169
nwiltsie
opened
3 months ago
0
`Cue` addition
#168
yashpatel6
opened
4 months ago
0
Bump external/pipeline-Nextflow-module from `537da32` to `1cfa9fa` in the pipeline-submodules group
#167
dependabot[bot]
closed
4 months ago
1
Release v5.2.0
#166
Faizal-Eeman
closed
5 months ago
2
Add base resource update
#165
Faizal-Eeman
closed
5 months ago
0
Process afterscript
#164
Faizal-Eeman
closed
5 months ago
3
Add base resource updater
#163
Faizal-Eeman
closed
5 months ago
0
Release `5.2.0`
#162
Faizal-Eeman
closed
5 months ago
0
Optimize Manta CPU
#161
Faizal-Eeman
closed
5 months ago
4
Bump the pipeline-submodules group across 1 directory with 2 updates
#160
dependabot[bot]
closed
5 months ago
3
Bump the pipeline-submodules group with 2 updates
#159
dependabot[bot]
closed
5 months ago
2
Update dependabot to group common submodules
#158
nwiltsie
closed
5 months ago
0
Use `methods.setup_process_afterscript()` for process logs
#157
nwiltsie
closed
5 months ago
0
Mask version number in config tests
#156
nwiltsie
closed
5 months ago
0
Bump external/pipeline-Nextflow-config from `bc3f67e` to `be1eaf5`
#155
dependabot[bot]
closed
5 months ago
2
Optimize CPU allocation for Manta
#154
tyamaguchi-ucla
closed
5 months ago
0
Bump external/pipeline-Nextflow-module from `4597ebc` to `ef40c10`
#153
dependabot[bot]
closed
6 months ago
1
Bump external/pipeline-Nextflow-config from `e703579` to `bc3f67e`
#152
dependabot[bot]
closed
6 months ago
2
Release `v5.1.0`
#151
Faizal-Eeman
closed
5 months ago
7
Release `v5.1.0`
#150
Faizal-Eeman
closed
5 months ago
0
Bump external/pipeline-Nextflow-config from `f3448ac` to `e703579`
#149
dependabot[bot]
closed
6 months ago
1
Bump external/pipeline-Nextflow-module from `9db08f0` to `4597ebc`
#148
dependabot[bot]
closed
6 months ago
0
Bump external/pipeline-Nextflow-config from `f3448ac` to `795384d`
#147
dependabot[bot]
closed
6 months ago
1
Upgrade to latest static analysis Action
#146
nwiltsie
closed
7 months ago
0
Bump external/pipeline-Nextflow-config from `f3448ac` to `af6a606`
#145
dependabot[bot]
closed
6 months ago
1
Update NFTest sample
#144
Faizal-Eeman
closed
7 months ago
3
Get appropriate test sample for NFtest
#143
Faizal-Eeman
closed
7 months ago
0
Add current supported NF version
#142
Faizal-Eeman
closed
7 months ago
0
Standardize metadata in repo
#141
Faizal-Eeman
closed
7 months ago
0
Update repository description to match standard
#140
nwiltsie
closed
7 months ago
0
Implement refactored Nextflow test workflows
#139
nwiltsie
closed
7 months ago
0
Re-enable testing workflow after breaking changes
#138
nwiltsie
closed
7 months ago
0
Bump external/pipeline-Nextflow-config from `3ec7186` to `f3448ac`
#137
dependabot[bot]
closed
8 months ago
0
Release 5.0.0
#136
Faizal-Eeman
closed
8 months ago
0
Add plantuml diagram
#135
Faizal-Eeman
closed
8 months ago
3
Release `5.0.0`
#134
yashpatel6
closed
8 months ago
1
Remove `regenotype gSV|gCNV` workflow from this pipeline
#133
Faizal-Eeman
opened
8 months ago
3
Backfill documentation for existing releases
#132
nwiltsie
closed
9 months ago
1
Add new standard pipeline workflows
#131
nwiltsie
closed
9 months ago
0
Add missing processes node config and memory optimization
#130
Faizal-Eeman
closed
9 months ago
0
Function updates
#129
Faizal-Eeman
closed
9 months ago
0
Missing call to methods.setup_docker_cpus()
#128
nwiltsie
closed
9 months ago
0
Missing call to methods.setup_docker_cpus()
#127
nwiltsie
closed
9 months ago
0
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