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Hi, I try to build my SBT database, but I get some problems.
There is my command below:
1. I use `computes` to saves signatures for NCBI sequence.
`find . -name '*' | xargs sourmash compute --outp…
J-I-P updated
3 years ago
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Hi,
Is it possible to use the path of the Tablet XML file as path to the assembly and reference files by default in the XML file.
Thanks,
Weizhi
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Hi Kris,
I was using VIBRANT and got an error:
```
`Traceback` (most recent call last):
File "/srv/scratch/z3336178/anaconda/envs/vibrant/bin/VIBRANT_run.py", line 623, in
with open('V…
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This is what the owl files for all 'target' besides 'emp' and 'mixs' read:
`YO SLOT: {}
YO SLOT: {}
YO SLOT: {}
YO SLOT: {}
YO SLOT: {}
YO SLOT: {}
YO SLOT: {}
YO SLOT: {'biolinkml': 'https:…
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Hey, I tried to apply Poppunk on MAGs. As no one has mentioned it before I wanted to ask if there is a problem with that. I know that sketching is regularly used with MAGs.
On my data, I get almos…
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```bash
(vamb_env) -bash-4.1$ vamb --fasta mage_output/M-1507-133.A/intermediate/assembly_output/scaffolds.fasta --jgi coverage_output/coverage_metabat2.tsv --outdir vamb_output
Traceback (most rec…
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## Problem
The pipeline should allow assembly of multiple samples instead/ in addition to treating them individually. For example several metagenome samples from the same study might share genomes an…
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Hi there!
Thanks for all the hard work and documentation!
I might be just confusing myself somehow or overlooking something, but it seems that here on the quick start page (https://eukulele.read…
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hi!
i am using new version of eggong-mapper. -m mmseq, it raises an error, so i run mmseq separately, the command like this:
/home/projects/ku_00041/data/testpplaa/Plaspline/conda_envs/759e9edb…
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Hello! I managed to get the full Atlas pipeline to work by restricting resource memory, but I was curious if I could use gtdb markers for taxonomic annotation using the same restricted memory availabi…