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Reproducible example:
```
wget "https://www.dropbox.com/s/8sx79nki2h4pmuk/mirror-mondo.json?dl=0" -O mirror-mondo.json
wget "https://raw.githubusercontent.com/monarch-initiative/mondo/master/src/…
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From @matentzn in https://github.com/ontodev/robot/issues/447
> So that GitHub diff is not confused every time we make a new release involving json serialisation of our ontologies. Low priority, but …
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See: https://github.com/mapping-commons/sssom-py/issues/227#issuecomment-1101205374
The following should work w/out needing a metadata `.yml`:
`sssom parse omim.json -I obographs-json -o omim.ssso…
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I am on ROBOT 1.9.0 snapshot:
When running ROBOT rename, the following prefixes do not get translated:
- ExO
- GSSO
- HsapDv
All of them are in the [updated OBO context](https://github.com…
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## Description
I have a `license` field in my `.yml` file, and I'm passing it to `sssom parse`, but I get a warning message saying that it can't find `license`.
Command I'm running
`sssom parse o…
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The ROBOT relax fails because of the following error when parsing `DOID_617`:
```
ROBOT encountered an error:
RAN: /home/harry/BioPortal-to-KGX/robot relax --input /tmp/tmpq3t8cyv0 --output tra…
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HGNC-OMIM mappings (where OMIM ids pertain to genes) are represented as owl:equivalentClass axioms in omim ingest. We should probably change that to using skos:exactMatch instead (or drop them entirel…
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The cli is currently ~25MB which is enormous considering what it does. It appears that a lot of this is some transient OWL API and other things, probably via phenol and obographs.
Check these are s…
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According to https://github.com/geneontology/obographs the JSON serialization should only contain one "nodes" element, and yet monod.json contains two. The second element seems to contain non-Mondo te…
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Note that have a proposed JSON representation of OBO that would obviate the need for special purpose parsers. Your comments as a developer would be most welcome:
- https://github.com/geneontology/obog…