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**1. What were you trying to do?**
I want to construct spliced pangenome graph and pantranscriptome using T2Tv2.0 genome and corresponding GFF3
T2Tv2.0 link: https://s3-us-west-2.amazonaws.co…
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### Database requests
My genome is available in the Canadian Personal Genome Project as PGPC_0004. I am in the process of reprocessing the dataset against T2T-CHM13_v2.0 at [https://ftp.ncbi.nlm.ni…
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Dear Authors,
Thank you for developing this wonderful tool and providing a very detailed list of the reads data involved in the published paper. However, I found that it's hard to identify the exac…
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I use GraphAligner to align some long reads to a gfa graph. But in the gam file, it looks lik…
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I use `vg paths -L -x chr21.xg` to get all the paths in the graph.
But when I want to genotyping the graph…
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Hi there,
I see that the GATK resource bundle is available on AnViL (eg: gs://fc-47de7dae-e8e6-429c-b760-b4ba49136eee/resources/chm13/resources-broad-hg38-v0-Mills_and_1000G_gold_standard.indels.hg…
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https://github.com/KLemonLab/CorPGA_Pangenomics_Metabolomics/blob/3ddd64944f119acf197334c4c51977f406e1d5db/SupplementalMethods_GENOMES.Rmd#L5
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1) Introduction to the episode. Say something about why we need to download data in the context of the lesson. This needs to wait for the resolution of https://github.com/paumayell/pangenomics/issues/…
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Running flagger_end_to_end.wdl via Cromwell with a slurm backend, I have an error in the call-preprocess step.
It looks like the error is that the index cannot be created for the bam.
Inputs are t…
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### Data Owner Name
Human PanGenomics Project
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://humanpangenome.org/
### Social M…