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Hi!
Thank you for this amazing tool! I'm really impressed at how fast it complete the task :) I built a pangenome with 150 Vibrio parahaemolyticus isolates, but was confused about interpreting diff…
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```---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
Cell In[8], line 1
----> 1 chains = ChainL…
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Hello!
I ran EarlGrey (v4.4.4) for multiple genomes (size between 500-600 Mb) using Slurm. Some jobs were completed but the others showed Out Of Memory (exit code 0).
For those OOM jobs, I chec…
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Hi there!
Thanks again for the great tool. I've been trying it on my personal data and I think it is finishing the OrthoFinder step now. I am not sure exactly where it fails, but I think it may be …
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Hi
I was running `RepeatModeler - 2.0.1` for my genome TE annotation, still return a high proportion `Unclassified` (33.39 %, 53% in total). I have checked the RepBase according to #128. But nothing …
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We want to represent sets of entities (e.g. gene sets) in the Biolink Model.
This is motivated by https://github.com/NCATS-Tangerine/NCATS-ReasonerStdAPI/issues/57.
This may be related to #348.
…
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Dear all,
run_dbcan version:
Based on commit https://github.com/linnabrown/run_dbcan/commit/f3dd111a9eaf552cdca14f4c8db06baabaa1f2f8, we cloned the repo and built the Docker image from https://git…
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Jon says:
> One thing that might be useful for researchers in general, could be a summary of the different MDAs with counts ?
> or a ranked list of how often different models are used in the final…
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The gene linkouts include Funnotate on this record, but there is no gene family assignment. One gets an uninteresting page from Funnotate.
[aesev.CIAT22838.gnm1.ann1.Ae0000010](https://jekyll-dev.l…