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Dear sir/maam,
I am getting error (Error: Unknown argument: "blastdb_version") while building database with RepeatModeler
./BuildDatabase -name Sonasal_3x.fasta -engine ncbi /home/anurag/Downloads…
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I have been running the most recent conda release of RepeatModeler which runs smoothly until round 6. The RepeatModeler job completes, but the LTR Structural Analysis never runs.
LTR Structural Ana…
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Hi,
I'm trying to run GraffiTE in the mode that bypasses the SV calling steps but it seems to get stuck at the tsd_prep step. I was wondering if you had any idea why?
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Hi,
When using hal2fasta to output the ancestral genome, I notice that the resulting ancestral FASTA file contains many lowercase letters. Does this indicate repeat regions? And should I perform re…
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Dear Robert
I hope you are doing well.
We met at the EuroBioC2024 and discussed the gDNAx package. We tried the package on our long read single cell rnaseq data. We are running into some errors. …
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Hi,
I was trying to convert the stk output file in a hmm, however, I got an interesting result with hmmbuild.
It seems like there are duplicated sequences within the same alignment (coordinates), th…
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Hello,
thanks for developing and maintaining this fascinating project.
I am trying to reproduce some of data pre-processing steps and couldn't figure out how exactly un-mappable genomic regions ar…
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* link to support ticket: [#2024091360000212](https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=167855)
* website: https://www.repeatmasker.org/
* installation docs: https://gi…
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Dear Professor Ou, @oushujun
I'm sorry to disturb you during your busy schedule, but now I have a question that I have to ask you.
**The issue I am most concerned about is the issue regarding th…