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### Description of feature
As one of the input database files (silva_species_assignment_v138.1.fa.gz) stores an information about the 16S gene primary accession in GenBank database, I'm looking for t…
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There's quite a bit of interest https://github.com/sourmash-bio/sourmash/issues/2816 https://github.com/sourmash-bio/sourmash/issues/3070 https://github.com/sourmash-bio/sourmash/issues/3089 in using…
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## High performance liquid chromatography (HPLC) phytoplankton pigment timeseries for the northern Salish Sea and central coast, British Columbia
## Best Practices Checklist
### In General
- [x] …
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**Overview**
Expansion of the ITIS data model to include zoo-rank "superspecies". Superspecies names are regulated by the ICZN. They are available names and also a subject of the Principle of Priorit…
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Some taxa return two TaxIDs and as a result the Biosamples are not included in the BeeBiome database.
Examples include the following taxa:
- Bombus matches TaxIDs 28641 (genus) and 144708 (subge…
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Hello. I'm having a little strange result,
When I use the "run_lefse" command, one of the groups (only two groups) is being pointed to the Bacteria kingdom prominently.
This is normal? how can I…
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Hello,
I am trying to run Centrifuge but it failed with the following error message which accumulate endlessly:
Use of uninitialized value $outputHeader in pattern match (m//) at /gpfs2/soft/201…
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```
What steps will reproduce the problem?
1. search for public data you own
2. in list view, select a record(s)
3. change from public to private, or hide email
What is the expected output? What do y…
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Hi all,
Thanks a lot for your efforts developing this tool.
I am using centrifuge for taxonomic profiling of metagenomes from various ecosystems and I am currently building databases for bacteria,…
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Hey Guys,
I am analyzing closed otu picking data that I acquired through qiime. However, I used a silva database. With that my OTU table consists of 16 taxonomic ranks(8-16 is basically NA)
So …