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Hi there,
Congrats on a great work, and thanks for developing this package.
I am attempting to pull TCR-seq data for T cells that also have the GEX/CITE-seq Seurat objects.
**QUESTION 1.** …
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Hi
We have used `Kit : 10X Genomics Next GEM Single Cell 5' v2 (Dual Index)` for `two healthy PBMCs` as a test experiment before investing on our main design
Now, for running the main experiment…
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Hello!
I recently sequenced some expanded CD8+ T-cells using a SMART-seq protocol. Given the full-length sequencing I was able to simultaneously capture the TCR-A and/or TCR-B information of most …
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Somewhere in prepare.py or in the scripts it uses, the pdb files are sorted in a way that causes the alternative residues to be placed after the normal residues which caused the dashed lines when view…
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https://github.com/bot52bot/LIN3-TCR/tree/master/LINETCR
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Hi Phil!
Thank you so much for all the work into creating and curating this great resource! I've been interested in leveraging TCRdock for predicting TCR binding specificity for some peptides of in…
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The AIRR Standard has a very rich set of metadata about how samples are processed for sequencing, including sample processing, cell processing, nucleic acid processing, and sequence data processing.
…
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## ❓ Questions and Help
We have a set of [listed tutorials available on the website](https://immunarch.com/articles/).
Hi, I have a question for using immunarch for TCR analysis with 2 (or more) d…
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For the `gliph-group-discovery` command, an option can be supplied as outlined in the documenation with the following example: `--refdb=mouseDB.fa`.
However, there is no example file provided on w…
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Hello,
Thanks for developing such great tools!
I am wondering if there is a way to apply tcr-dist on cdr3 amino acid sequences.
Currently, the instructions say it is required "nucleotide sequ…