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Using various tests and measurements of the same target. For example, Metholation and transcriptomics could perhaps be useful co-domains. https://www.biorxiv.org/content/early/2018/04/11/217554 is a …
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Thank you for creating Tangram,
incredibly useful and impressive tool, for cell deconvolution in spatial transcriptomics.
I wondered if Tangram has the ability to detect cell type specific expr…
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As a user of the DCP sc transcriptomics data, I'd like to be able to obtain tertiary analysis results on DCP data.
As a user of the DCP, I'd like for releases of HCA data to contain tertiary analysis…
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There are in general mixed-up concepts and terms, and missing or abundant concepts and terms, related to transcription analysis and data.
e.g.
gene expression vs. transcription
microarray vs. transcr…
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Hi there, thank you very much for the tool!
I wanted to clarify if my understanding of why the EMD is defined with the upper limit of 2k is accurate. Is this due to the physical graph structure f…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/YMa-lab/CARDspa
Confirm the following by editing …
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`dplyr` and `tidyr` have evolved in the past 2 years, and we need to update the front end of the tidy adapters
- tidySummarizedExperiment
- tidySingleCellExperiment
- tidyseurat
- tidySpatialExperim…
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There is an API which allows to easily retrieve pre-calculated tags of PubMed papers, with extracted bioconcepts including gene, chemical, disease, mutation and species:
![Screenshot from 2020-06-1…
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In GitLab by @kelsey.chetnik on Jun 15, 2020, 13:12
Commonly used method in transcriptomics... usefulness for metabolomics unclear. Maybe check literature who has used limma in metabolomics.
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Project Title: Single Cell Transcriptomics of a Human Kidney Allograft Biopsy Defines a Diverse Inflammatory ResponseProject UUID: 027c51c6-0719-469f-a7f5-640fe57cbeceWrangler/s: Parisa,, Nejad; PI/s:…