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Dear Community,
I would like to ask about the suggested coverage for the tetraploid genome.
(The targeted species is the plant. I know the suggested coverage is probably also related to heterozygo…
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Dear Robert
I hope you are doing well.
We met at the EuroBioC2024 and discussed the gDNAx package. We tried the package on our long read single cell rnaseq data. We are running into some errors. …
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Hello,
I run bamquery
```python
!python xxx/Software/bamquery/BamQuery/BamQuery.py xxx/Software/bamquery/BamQuery try_1 v38_104 --mode normal --t 8 --plots
```
And my output is as follows,
`…
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Dear Sir,
I saw kmc_genome_counts is used in https://github.com/msauria/T2T_Kmer_Analysis for the analysis of the T2T genome. But I cannot find it in the current KMC. I wonder how I would be able t…
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I am using star first time, and tryng to run STAR for denovo analysis but every time its killed after some time i thought it may be due to memory but i have 500 GB space in my system , can some one su…
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(panX) anna@Anna-PC:~/work/pan-genome-analysis$ sudo sh run-TestSet.sh
Traceback (most recent call last):
File "./panX.py", line 6, in
from pangenome_computation import pangenome
File "/h…
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Hello,
I am using SNPGenie for a Genome-wide SNPs dataset of 70 individuals of a haploid organism consisting of 14 chromosomes, using as input a VCFfile. For the requirements of the tool, I have sp…
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-searching for indexed reference genome to decrease computational resources needed for indexing
- links :
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_a…
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Hello,
Please, I have done the "ufcg download -t full" and when I run the profile analysis with --set NUC , the tool is not finding any ITS gene for any of the genomes.
The other --set options are w…
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Hello,
is this repo still active?
I found some problems building the docker:
## Problem1 (probably solved) : Package python-software-properties not available
```
$ git clone https://github…