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Viralrecon analysis of the QC samples to compare with the QC results.
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Hi @wdecoster,
Thanks for the NanoPack tools, they're fantastic!
Hit an error as it looks like different nanopore basecallers or versions upstream can produce different time formats. The error i…
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### Description of the bug
when using the medaka path of the of the viralrecon pipeline an error is occuring. Seems the redirection for the file is broken (at least with curl the -L option has to be …
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Hi,
Thanks for making this tool available to the community! I've been attempting to test this out on our own nanopore data and ran into an issue at the basecalling problematic reads step.
```
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Hi there,
Would it be possible to udpate the version of nanopolish working in conda please ?
Best,
Elodie
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Dear,
I am working on an 18S sequencing project. For that I have to analyze my data and I have no programming skills. I am interested in the MetONTIIME workflow, do you have a demonstration of the …
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Hi,
I am running haploflow on a SARS-cov-2 sample (amplicon based).
If I run it on raw data, the run completes, but if I run it on soft clipped reads, it fails without an error message I can see.…
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Hi,
Really fantastic work on this project! Looks like a great alternative to readfish/uncalled/ONT's own adaptive sampling!
I wanted to run this on a fresh install of Minknow, but since march M…
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Megalodon (2.5.0) does not seem to support `samtools` in SLURM.
Here are the parts related to the `samtools` errors:
```
[10:08:18] Running Megalodon version 2.5.0
DBG 10:08:18 : Command: ""…
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I'm running metagenomic analysis with Sqeezemeta on data generated from nanopore minion sequence and using flye as the assembler. I got the error message below: How do I solve this issue?
Stoppin…