-
https://ftp.ncbi.nih.gov/genomes/
https://www.ncbi.nlm.nih.gov/genome/doc/ftpfaq/
List of `refSeq` sequences: https://ftp.ncbi.nih.gov/genomes/refseq/assembly_summary_refseq.txt
Example: [direc…
-
```javascript
E-fetching 6055 genbank records from BioProject PRJNA313047 and writing to. This may take a while.
Parsing genbank records.
'NG_074760.1'
Processing record 1 of 6055 (accession NG_0…
-
The crash in the proteome comparison tool at the tutorial this week was a result of feature fig|1945512.3.peg.14 not having a translation. That feature derived from the genbank file https://www.ncbi.n…
-
I'm puzzled and need help understanding. Consider [NM_015068.3](https://www.ncbi.nlm.nih.gov/nuccore/NM_015068.3). I think that the exons given in the CDOT JSON skip one base that needs to be in the C…
-
-
**Are you using the latest release?**
I am using version 1.8.7
**Describe the bug**
Funannotate update fails at the end while comparing annotations. 2 models have no ID. I ran train and predict, …
-
Since we are dependent on the taxIDs in the genbank file all being the same but we dont actually ever check this, we should check it. I should also put this in as part of the consistency checking scri…
-
Several transcripts in `NC_012920.1` (rCRS) are annotated with an incomplete CDS. This CDS is completed by the addition of a 3' polyA tail to the mRNA.
This is annotated in the GenBank file as a note…
-
Hi,
I'm facing a problem with a bank that download a lots of files.
I'm trying to get files from `Genbank WGS` (`ftp://ftp.ncbi.nlm.nih.gov/genbank/wgs`).
This directory contains around 84,000 files.…
-
## Describe the desired feature/enhancement
The `io/genbank` package needs a significant refactor or to be re-written entirely.
### Is your feature request related to a problem?
There are several…