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**Improvement Description**
A forum user [suggested](https://forum.qiime2.org/t/seeding-the-rarefaction-algorithm/76) that we add support for seeding rarefaction, which is an interesting idea for sup…
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I'm doing NMDS with `ordinate` and trying to get three axes rather than two. I see in the documentation that I can set `k = 3`. This works with the Bray distance, but not with UniFrac or weighted Un…
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Hi,
I am working with a haploid-diploid wasp species (females are diploid and males are haploid) and I have bam file data from a mix of haploid and diploid individuals mapping to the same haploid ref…
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We will need to mock a browser to some extent for this to happen, it may be a bit annoying, but it should be doable.
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Hi! Currently, when performing ordination (PCoA), there is no straightforward way to retrieve the original features that contribute the most to the reduced dimensions. Every time, the user would need …
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Hello!
I'm trying to use mFD to calculate beta functional diversity following the "General Workflow". I've computed multimensional functional spaces and assessed their quality,and Here are the mad va…
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Hey Vegan devs,
I have recently been using ordiR2step to analyze my data, but I have found what I think is a small quark in the processing (vegan v 2.5-6). I have 4 independent variables and when I…
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Just reporting a warning out of ggplot
![image](https://github.com/ChiLiubio/microeco/assets/68851733/49838870-ba5f-426a-af45-315a864860c1)
That might be because the trans_beta$new is grouped by R…
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Hi,
maybe not the place for this, but I wonder if anyone has encounter a similar issue.
I don't get convergence in my NMDS when using:
ordinate(ps1, "NMDS", "bray")
(My pseq looks like this):
…
sfeds updated
2 years ago
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Currently theres's no way to specify the shapes to be used for different groups in `make_2d_plots.py`, this was brought up by QIIME-Forum user Atul Garg in [this post](https://groups.google.com/forum/…